Books

• Hamilton MB. Population Genetics. Hoboken, NJ: Wiley/Blackwell, 2009.

Articles in journals

• Leviyang S. and M. B. Hamilton. "Properties of Weir and Cockerham’s Fst estimators and associated bootstrap confidence intervals.." Theoretical Population Biology 79 (2011): 39-52.
• Immler, S., M. B. Hamilton, Poslusny, N., Birkhead, T., and Epifanio, J. "Postmating reproductive barriers in two unidirectionally hybridising sunfish (Centrarchidae: Lepomis)." Journal of Evolutionary Biology 24.1 (2011): 111–120.
• Sheridan, C., Douglas, M., Power, L., Wimp, G., and Hamilton, M. B. . "Isolation, characterization, and cross-species amplification of nuclear microsatellite loci in two salt marsh planthoppers, Delphacodes detecta and Tumidagena minuta (Homoptera: Delphacidae)." Molecular Ecology Resources 11.1 (2011): 219-222.
• Soria-Hernanz, D. F., Braverman, J. M., and Hamilton M. B.. "Parallel rate heterogeneity in chloroplast and mitochondrial genomes of Brazil nut trees (Lecythidaceae) is consistent with lineage effects." Molecular Biology and Evolution 25.7 (2008): 1282-1296.
• Soria-Hernanz, D. F., Fiz Palacios, O., Braverman, J. M., and Hamilton M. B.. "Reconsidering the generation time hypothesis based on nuclear ribosomal ITS sequence comparisons in annual and perennial angiosperms." BMC Evolutionary Biology 8.344 (2008).
• Miller, J. R., D Wood, and M. B. Hamilton.. "FST and QST under neutrality." Genetics 180 (2008): 1023-1037.
• Rottenstreich S, Hamilton MB, Miller JR. "Dynamics of FST for the island model." Theoretical Population Biology 72 (2007): 485-503.
• Drummond, C. D., and M. B. Hamilton. "Hierarchical components of genetic variation at a species boundary: population structure in two sympatric varieties of Lupinus microcarpus (Leguminosae).." Molecular Ecology 162 (2007): 753-769.
• Rottenstreich S., Miller J., Hamilton M. "Mean and Variance of Steady State GST for the island model." Theoretical Population Biology 72 (2007): 231-244.
• Miller, J. R., M. C. Pugh, and M. B. Hamilton. "A finite locus effect diffusion model for the evolution of a quantitative trait.." Journal of Mathematical Biology 52.6 (2006): 761-787.
• Brown K. M., G. Baltazar, and M. B. Hamilton. " Reconciling nuclear microsatellite and mitochondrial marker estimates of population structure: breeding population structure of Chesapeake Bay striped bass (Morone saxatilis).." Heredity 94 (2005): 606-615.
• Adams, R. I, K. M. Brown and M. B. Hamilton. "The impact of microsatellite electromorph size homoplasy on multilocus population structure estimates in a tropical tree (Corythophora alta) and an anadromous fish (Morone saxatilis).." Molecular Ecology 13 (2004): 2579-2588.
• Hamilton, M. B., J. M. Braverman, and D. Soria-Hernanz. "Patterns and relative rates of nucleotide and insertion/deletion evolution at six chloroplast intergenic regions in New World species of the Lecythidaceae.." Molecular Biology and Evolution 20 (2003): 1710-1721.
• Hamilton, M. B., and J. R. Miller. "Comparing relative rates of pollen and seed gene flow in the island model using nuclear and organelle measures of population structure.." Genetics 162 (2003): 1897-1909.
• Hamilton, M. B.. "Tropical tree gene flow and seed dispersal.." Nature 401 (1999): 129-130.